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Commit c735bc5d authored by jdurrant's avatar jdurrant
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Updates to address new SharedArrayBuffer requirements.

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CHANGELOG.md
View file @ c735bc5d
Changes
=======
1.0.3
-----
* Due to a recent browser update, web servers hosting Webina must now send the
`Cross-Origin-Embedder-Policy: require-corp` and `Cross-Origin-Opener-Policy:
same-origin` headers.
* Updated `README.md` to explain the need for these new headers.
* The webina.zip file now includes a simple Python3 server that provides the
required headers, to facilitate testing on users' local machines.
* Starting with this version, we will no longer generate technical documentation
describing the Webina source code. Documentation describing basic usage,
compilation, etc. can be found in the `README.md` file.
1.0.2
-----
......
README.md
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# Webina 1.0.2 #
# Webina 1.0.3 #
## Introduction ##
......@@ -257,15 +257,19 @@ these instructions:
2. Uncompress the file: `unzip webina.zip`
3. Change to the new `webina/` directory: `cd webina`
4. Start a local server.
* You can use `Node.js` and `npm`:
* `npm install -g http-server`
* `http-server`
* [With some
coding](https://curiousprog.com/2018/10/08/serving-webassembly-files-with-a-development-web-server/),
you can also use Python 2.7's built-in server:
* `python -m SimpleHTTPServer 8000`
5. Access the server from your web-browser (e.g., `http://localhost:8000/`,
`http://0.0.0.0:8000/`, etc.)
* Webina uses `SharedArrayBuffer` to leverage multiple processors, so your
server must send the [following
headers](https://developer.chrome.com/blog/enabling-shared-array-buffer/):
* `Cross-Origin-Embedder-Policy: require-corp`
* `Cross-Origin-Opener-Policy: same-origin`
* To simplify testing on users' local machines, the Webina download includes
a Python3 web-server script.
* The script is named `simple-server.py.txt` (with a `.txt` extension) for
security purposes, so first rename it to `simple-server.py`
* `mv simple-server.py.txt simple-server.py`
* Then run from the command line:
* `python3 simple-server.py`
5. Access the server from your web-browser.
Running Webina on other operating systems (e.g., Windows) should be similar.
......
package-lock.json
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package.json
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{
"name": "webina",
"version": "1.0.2",
"version": "1.0.3",
"description": "",
"private": true,
"scripts": {
......@@ -20,7 +20,6 @@
"css-loader": "^3.5.1",
"duplicate-package-checker-webpack-plugin": "^3.0.0",
"file-loader": "^4.3.0",
"google-closure-compiler": "^20190929.0.0",
"html-webpack-plugin": "^3.2.0",
"jquery": "^3.4.1",
"mini-css-extract-plugin": "^0.8.2",
......@@ -43,6 +42,7 @@
"bootstrap": "^4.4.1",
"bootstrap-vue": "^2.11.0",
"file-saver": "^2.0.2",
"google-closure-compiler": "^20210601.0.0",
"popper.js": "^1.16.1",
"vue": "^2.6.11"
}
......
src/UI/Tabs/VinaExistingOutput.ts
View file @ c735bc5d
......@@ -39,7 +39,7 @@ let methodsFunctions = {
val: this.$store.state["crystalContentsExample"]
});
resolve();
resolve(undefined);
}, 100);
})
......
src/UI/ThreeDMol.ts
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......@@ -155,7 +155,10 @@ let methodsFunctions = {
// console.log(this["type"], "Adding " + typeStr, pdb.length);
this[typeStr + "PdbOfLoaded"] = pdb;
this["viewer"].removeModel(this[typeStr + "Mol"]);
let prevModel = this[typeStr + "Mol"];
if (prevModel !== undefined) {
this["viewer"].removeModel(prevModel);
}
this["viewer"].resize();
this[typeStr + "Mol"] = this["viewer"].addModel(pdb, "pdb", {"keepH": true});
......@@ -562,68 +565,68 @@ let methodsFunctions = {
let watchFunctions = {
/**
* Watch when the receptorContents computed property.
* @param {string} oldReceptorContents The old value of the property.
* @param {string} newReceptorContents The new value of the property.
* @param {string} oldReceptorContents The old value of the property.
* @returns void
*/
"receptorContents": function (oldReceptorContents: string, newReceptorContents: string): void {
"receptorContents": function (newReceptorContents: string, oldReceptorContents: string): void {
// The purpose of this is to react when new receptorContents
// are added.
let duration: number = (newReceptorContents === "") ? 0 : 500;
let duration: number = (oldReceptorContents === "") ? 0 : 500;
this.modelAdded(duration);
// this.updateBox(); // So when invalid pdb loaded, can recover with valid pdb.
},
/**
* Watch when the ligandContents computed property.
* @param {string} oldLigandContents The old value of the property.
* @param {string} newLigandContents The new value of the property.
* @param {string} oldLigandContents The old value of the property.
* @returns void
*/
"ligandContents": function (oldLigandContents: string, newLigandContents: string): void {
"ligandContents": function (newLigandContents: string, oldLigandContents: string): void {
// The purpose of this is to react when new ligandContents are
// added.
let duration: number = (newLigandContents === "") ? 0 : 500;
let duration: number = (oldLigandContents === "") ? 0 : 500;
this.modelAdded(duration);
},
/**
* Watch when the dockedContents computed property.
* @param {string} oldDockedContents The old value of the property.
* @param {string} newDockedContents The new value of the property.
* @param {string} oldDockedContents The old value of the property.
* @returns void
*/
"dockedContents": function (oldDockedContents: string, newDockedContents: string): void {
"dockedContents": function (newDockedContents: string, oldDockedContents: string): void {
// The purpose of this is to react when new dockedContents are
// added.
let duration: number = (newDockedContents === "") ? 0 : 500;
let duration: number = (oldDockedContents === "") ? 0 : 500;
this.modelAdded(duration);
},
/**
* Watch when the crystalContents computed property.
* @param {string} oldCrystalContents The old value of the property.
* @param {string} newCrystalContents The new value of the property.
* @param {string} oldCrystalContents The old value of the property.
* @returns void
*/
"crystalContents": function (oldCrystalContents: string, newCrystalContents: string): void {
"crystalContents": function (newCrystalContents: string, oldCrystalContents: string): void {
// The purpose of this is to react when new dockedContents are
// added.
let duration: number = (newCrystalContents === "") ? 0 : 500;
let duration: number = (oldCrystalContents === "") ? 0 : 500;
this.modelAdded(duration);
},
/**
* Watch when the vinaParams computed property.
* @param {string} oldVinaParams The old value of the property.
* @param {string} newVinaParams The new value of the property.
* @param {string} oldVinaParams The old value of the property.
* @returns void
*/
vinaParams(oldVinaParams: string, newVinaParams: string): void {
vinaParams(newVinaParams: string, oldVinaParams: string): void {
// For updating the docking box...
if (this["type"] !== "receptor") {
return;
......
src/Utils.ts
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......@@ -67,6 +67,7 @@ export function curPath(): string {
}
return url;
}
/**
* Given a filename, replace its extension.
* @param {string} filename The original filename.
......
src/Version.ts
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......@@ -2,4 +2,4 @@
// LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
// details. Copyright 2020 Jacob D. Durrant.
export let VERSION = "1.0.2";
export let VERSION = "1.0.3";
src/index.ts
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......@@ -6,11 +6,10 @@
import * as UI from "./UI/UI";
import * as VueSetup from "./Vue/Setup";
import { VERSION } from "./Version";
declare var ga;
console.log("Webina Web App " + VERSION);
declare var ga;
VueSetup.setup();
UI.setup();
......
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