Commit 472754cf authored by Jacob Durrant's avatar Jacob Durrant

Updated parp-1 docking-parameter description files.

parent 32888c92
......@@ -10,7 +10,7 @@
<meta charset="utf-8">
<meta content="text/html; charset=utf-8" http-equiv="Content-Type">
<title>Webina</title>
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<body>
<div id="app"></div>
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<script src="vuex.min.js"></script>
<script src="bootstrap-vue.min.js"></script>
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</html>
center_x:
center_y:
center_z:
center_x: -42
center_y: 2
center_z: -5
size_x: 12
size_y: 20
size_z: 14
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center_x:
center_y:
center_z:
center_x: -39
center_y: 5
center_z: -8
size_x: 15
size_y: 20
size_z: 14
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center_x:
center_y:
center_z:
center_x: -37
center_y: 6
center_z: -7
size_x: 16
size_y: 20
size_z: 14
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......@@ -129,7 +129,7 @@
<li class="tsd-description">
<aside class="tsd-sources">
<ul>
<li>Defined in UI/Tabs/VinaParams.ts:330</li>
<li>Defined in UI/Tabs/VinaParams.ts:334</li>
</ul>
</aside>
<div class="tsd-comment tsd-typography">
......@@ -152,7 +152,7 @@
<li class="tsd-description">
<aside class="tsd-sources">
<ul>
<li>Defined in UI/Tabs/VinaParams.ts:338</li>
<li>Defined in UI/Tabs/VinaParams.ts:342</li>
</ul>
</aside>
<div class="tsd-comment tsd-typography">
......@@ -214,6 +214,11 @@
<li>Defined in UI/Tabs/VinaParams.ts:22</li>
</ul>
</aside>
<div class="tsd-comment tsd-typography">
<div class="lead">
<p>Whether to show the keep-protein-only link. Has both a getter and a setter.</p>
</div>
</div>
<section class="tsd-panel tsd-member tsd-kind-function tsd-parent-kind-object-literal tsd-is-not-exported">
<a name="computedfunctions.showkeepproteinonlylink.get" class="tsd-anchor"></a>
<h3>get</h3>
......@@ -280,7 +285,7 @@
<li class="tsd-description">
<aside class="tsd-sources">
<ul>
<li>Defined in UI/Tabs/VinaParams.ts:277</li>
<li>Defined in UI/Tabs/VinaParams.ts:281</li>
</ul>
</aside>
<div class="tsd-comment tsd-typography">
......@@ -356,16 +361,25 @@
<li class="tsd-description">
<aside class="tsd-sources">
<ul>
<li>Defined in UI/Tabs/VinaParams.ts:184</li>
<li>Defined in UI/Tabs/VinaParams.ts:188</li>
</ul>
</aside>
<div class="tsd-comment tsd-typography">
<div class="lead">
<p>Removes residues from protein model that are not protein amino acids.</p>
</div>
</div>
<h4 class="tsd-parameters-title">Parameters</h4>
<ul class="tsd-parameters">
<li>
<h5>e: <span class="tsd-signature-type">any</span></h5>
<div class="tsd-comment tsd-typography">
<p>The click event.</p>
</div>
</li>
</ul>
<h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">void</span></h4>
<p>void</p>
</li>
</ul>
</section>
......@@ -402,7 +416,7 @@
<li class="tsd-description">
<aside class="tsd-sources">
<ul>
<li>Defined in UI/Tabs/VinaParams.ts:318</li>
<li>Defined in UI/Tabs/VinaParams.ts:322</li>
</ul>
</aside>
<div class="tsd-comment tsd-typography">
......@@ -458,7 +472,7 @@
<li class="tsd-description">
<aside class="tsd-sources">
<ul>
<li>Defined in UI/Tabs/VinaParams.ts:230</li>
<li>Defined in UI/Tabs/VinaParams.ts:234</li>
</ul>
</aside>
<div class="tsd-comment tsd-typography">
......
......@@ -73,6 +73,7 @@
<section class="tsd-index-section tsd-is-not-exported">
<h3>Variables</h3>
<ul class="tsd-index-list">
<li class="tsd-kind-variable tsd-parent-kind-module tsd-is-not-exported"><a href="_ui_vinacommandline_.html#filesaver" class="tsd-kind-icon">File<wbr>Saver</a></li>
<li class="tsd-kind-variable tsd-parent-kind-module tsd-is-not-exported"><a href="_ui_vinacommandline_.html#vue" class="tsd-kind-icon">Vue</a></li>
</ul>
</section>
......@@ -86,6 +87,7 @@
<h3>Object literals</h3>
<ul class="tsd-index-list">
<li class="tsd-kind-object-literal tsd-parent-kind-module tsd-is-not-exported"><a href="_ui_vinacommandline_.html#computedfunctions" class="tsd-kind-icon">computed<wbr>Functions</a></li>
<li class="tsd-kind-object-literal tsd-parent-kind-module tsd-is-not-exported"><a href="_ui_vinacommandline_.html#methodsfunctions" class="tsd-kind-icon">methods<wbr>Functions</a></li>
</ul>
</section>
</div>
......@@ -93,6 +95,16 @@
</section>
<section class="tsd-panel-group tsd-member-group tsd-is-not-exported">
<h2>Variables</h2>
<section class="tsd-panel tsd-member tsd-kind-variable tsd-parent-kind-module tsd-is-not-exported">
<a name="filesaver" class="tsd-anchor"></a>
<h3>File<wbr>Saver</h3>
<div class="tsd-signature tsd-kind-icon">File<wbr>Saver<span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">any</span></div>
<aside class="tsd-sources">
<ul>
<li>Defined in UI/VinaCommandline.ts:6</li>
</ul>
</aside>
</section>
<section class="tsd-panel tsd-member tsd-kind-variable tsd-parent-kind-module tsd-is-not-exported">
<a name="vue" class="tsd-anchor"></a>
<h3>Vue</h3>
......@@ -116,7 +128,7 @@
<li class="tsd-description">
<aside class="tsd-sources">
<ul>
<li>Defined in UI/VinaCommandline.ts:69</li>
<li>Defined in UI/VinaCommandline.ts:106</li>
</ul>
</aside>
<div class="tsd-comment tsd-typography">
......@@ -138,7 +150,7 @@
<div class="tsd-signature tsd-kind-icon">computed<wbr>Functions<span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">object</span></div>
<aside class="tsd-sources">
<ul>
<li>Defined in UI/VinaCommandline.ts:8</li>
<li>Defined in UI/VinaCommandline.ts:9</li>
</ul>
</aside>
<div class="tsd-comment tsd-typography">
......@@ -156,7 +168,7 @@
<li class="tsd-description">
<aside class="tsd-sources">
<ul>
<li>Defined in UI/VinaCommandline.ts:21</li>
<li>Defined in UI/VinaCommandline.ts:22</li>
</ul>
</aside>
<div class="tsd-comment tsd-typography">
......@@ -169,6 +181,52 @@
</li>
</ul>
</section>
<section class="tsd-panel tsd-member tsd-kind-function tsd-parent-kind-object-literal tsd-is-not-exported">
<a name="computedfunctions.ligandfilename" class="tsd-anchor"></a>
<h3>ligand<wbr>File<wbr>Name</h3>
<ul class="tsd-signatures tsd-kind-function tsd-parent-kind-object-literal tsd-is-not-exported">
<li class="tsd-signature tsd-kind-icon">ligand<wbr>File<wbr>Name<span class="tsd-signature-symbol">(</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span></li>
</ul>
<ul class="tsd-descriptions">
<li class="tsd-description">
<aside class="tsd-sources">
<ul>
<li>Defined in UI/VinaCommandline.ts:77</li>
</ul>
</aside>
<div class="tsd-comment tsd-typography">
<div class="lead">
<p>Gets the ligand file name from the VueX store.</p>
</div>
</div>
<h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">string</span></h4>
<p>string The ligand file name.</p>
</li>
</ul>
</section>
<section class="tsd-panel tsd-member tsd-kind-function tsd-parent-kind-object-literal tsd-is-not-exported">
<a name="computedfunctions.receptorfilename" class="tsd-anchor"></a>
<h3>receptor<wbr>File<wbr>Name</h3>
<ul class="tsd-signatures tsd-kind-function tsd-parent-kind-object-literal tsd-is-not-exported">
<li class="tsd-signature tsd-kind-icon">receptor<wbr>File<wbr>Name<span class="tsd-signature-symbol">(</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span></li>
</ul>
<ul class="tsd-descriptions">
<li class="tsd-description">
<aside class="tsd-sources">
<ul>
<li>Defined in UI/VinaCommandline.ts:69</li>
</ul>
</aside>
<div class="tsd-comment tsd-typography">
<div class="lead">
<p>Gets the receptor file name from the VueX store.</p>
</div>
</div>
<h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">string</span></h4>
<p>string The receptor file name.</p>
</li>
</ul>
</section>
<section class="tsd-panel tsd-member tsd-kind-function tsd-parent-kind-object-literal tsd-is-not-exported">
<a name="computedfunctions.vinaparamsvalidate" class="tsd-anchor"></a>
<h3>vina<wbr>Params<wbr>Validate</h3>
......@@ -179,7 +237,7 @@
<li class="tsd-description">
<aside class="tsd-sources">
<ul>
<li>Defined in UI/VinaCommandline.ts:13</li>
<li>Defined in UI/VinaCommandline.ts:14</li>
</ul>
</aside>
<div class="tsd-comment tsd-typography">
......@@ -193,6 +251,59 @@
</ul>
</section>
</section>
<section class="tsd-panel tsd-member tsd-kind-object-literal tsd-parent-kind-module tsd-is-not-exported">
<a name="methodsfunctions" class="tsd-anchor"></a>
<h3><span class="tsd-flag ts-flagLet">Let</span> methods<wbr>Functions</h3>
<div class="tsd-signature tsd-kind-icon">methods<wbr>Functions<span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">object</span></div>
<aside class="tsd-sources">
<ul>
<li>Defined in UI/VinaCommandline.ts:83</li>
</ul>
</aside>
<div class="tsd-comment tsd-typography">
<div class="lead">
<p>An object containing the vue-component methods functions.</p>
</div>
</div>
<section class="tsd-panel tsd-member tsd-kind-function tsd-parent-kind-object-literal tsd-is-not-exported">
<a name="methodsfunctions.downloadfile" class="tsd-anchor"></a>
<h3>download<wbr>File</h3>
<ul class="tsd-signatures tsd-kind-function tsd-parent-kind-object-literal tsd-is-not-exported">
<li class="tsd-signature tsd-kind-icon">download<wbr>File<span class="tsd-signature-symbol">(</span>e<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">any</span>, type<span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">string</span><span class="tsd-signature-symbol">)</span><span class="tsd-signature-symbol">: </span><span class="tsd-signature-type">void</span></li>
</ul>
<ul class="tsd-descriptions">
<li class="tsd-description">
<aside class="tsd-sources">
<ul>
<li>Defined in UI/VinaCommandline.ts:91</li>
</ul>
</aside>
<div class="tsd-comment tsd-typography">
<div class="lead">
<p>Downloads either the receptor or ligand files.</p>
</div>
</div>
<h4 class="tsd-parameters-title">Parameters</h4>
<ul class="tsd-parameters">
<li>
<h5>e: <span class="tsd-signature-type">any</span></h5>
<div class="tsd-comment tsd-typography">
<p>The click event.</p>
</div>
</li>
<li>
<h5>type: <span class="tsd-signature-type">string</span></h5>
<div class="tsd-comment tsd-typography">
<p>The type of file, either &quot;receptor&quot; or &quot;ligand&quot;.</p>
</div>
</li>
</ul>
<h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">void</span></h4>
<p>void</p>
</li>
</ul>
</section>
</section>
</section>
</div>
<div class="col-4 col-menu menu-sticky-wrap menu-highlight">
......@@ -280,6 +391,9 @@
</nav>
<nav class="tsd-navigation secondary menu-sticky">
<ul class="before-current">
<li class=" tsd-kind-variable tsd-parent-kind-module tsd-is-not-exported">
<a href="_ui_vinacommandline_.html#filesaver" class="tsd-kind-icon">File<wbr>Saver</a>
</li>
<li class=" tsd-kind-variable tsd-parent-kind-module tsd-is-not-exported">
<a href="_ui_vinacommandline_.html#vue" class="tsd-kind-icon">Vue</a>
</li>
......@@ -289,6 +403,9 @@
<li class=" tsd-kind-object-literal tsd-parent-kind-module tsd-is-not-exported">
<a href="_ui_vinacommandline_.html#computedfunctions" class="tsd-kind-icon">computed<wbr>Functions</a>
</li>
<li class=" tsd-kind-object-literal tsd-parent-kind-module tsd-is-not-exported">
<a href="_ui_vinacommandline_.html#methodsfunctions" class="tsd-kind-icon">methods<wbr>Functions</a>
</li>
</ul>
</nav>
</div>
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