Removed docs directory (not part of repo)

.gitignore

@@ -21,3 +21,4 @@ _build
 docs/docs
 .ipynb_checkpoints
 make.bat
+docs

docs/compile/Makefile

-# Minimal makefile for Sphinx documentation
-#
-
-# You can set these variables from the command line.
-SPHINXOPTS    =
-SPHINXBUILD   = sphinx-build
-SOURCEDIR     = .
-BUILDDIR      = _build
-
-# Put it first so that "make" without argument is like "make help".
-help:
-	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
-
-.PHONY: help Makefile
-
-# Catch-all target: route all unknown targets to Sphinx using the new
-# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
-%: Makefile
-	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
\ No newline at end of file

docs/compile/README.md

-# Compile Documentation
-
-This directory contains the files needed to generate BINANA documentation using
-`sphinx`. To compile the documentation, run `./compile.sh`. The output is
-written to `../dist/`.
-
-Works only on UNIX-like systems.
\ No newline at end of file

docs/compile/compile.sh

-# Must use Python3
-source activate Python36
-
-# Clean up previous builds
-rm -rf _rst
-
-# First, convert python source code to rst
-mkdir _rst
-sphinx-apidoc --module-first -f -o _rst/ ../../binana/
-
-# Copy README.md here.
-cp ../../README.md ./tmp.md
-
-make html
-
-rm -rf ../docs
-mv _build/html ../docs
-
-# Tweak the styles a bit
-echo >> ../docs/_static/bizstyle.css
-echo ".field-name {min-width:90px;}" >> ../docs/_static/bizstyle.css
-echo ".field-body {padding-left:10px !important;}" >> ../docs/_static/bizstyle.css
-
-# Delete README.md file
-rm tmp.md

docs/compile/conf.py

-# -*- coding: utf-8 -*-
-#
-# Configuration file for the Sphinx documentation builder.
-#
-# This file does only contain a selection of the most common options. For a
-# full list see the documentation:
-# http://www.sphinx-doc.org/en/master/config
-
-# -- Path setup --------------------------------------------------------------
-
-# If extensions (or modules to document with autodoc) are in another directory,
-# add these directories to sys.path here. If the directory is relative to the
-# documentation root, use os.path.abspath to make it absolute, like shown here.
-#
-import os
-import sys
-sys.path.insert(0, os.path.abspath('../..'))
-
-
-# -- Project information -----------------------------------------------------
-
-project = u'BINANA'
-copyright = u'2021, Jacob D. Durrant'
-author = u'Jacob D. Durrant'
-
-# The short X.Y version
-version = u''
-# The full version, including alpha/beta/rc tags
-release = u''
-
-
-# -- General configuration ---------------------------------------------------
-
-# If your documentation needs a minimal Sphinx version, state it here.
-#
-# needs_sphinx = '1.0'
-
-# Add any Sphinx extension module names here, as strings. They can be
-# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
-# ones.
-extensions = [
-    'sphinx.ext.autodoc',
-    'sphinx.ext.doctest',
-    'sphinx.ext.coverage',
-    'sphinx.ext.viewcode',
-    'sphinx.ext.napoleon',
-    'myst_parser'
-]
-
-
-napoleon_numpy_docstring = False
-
-
-# Add any paths that contain templates here, relative to this directory.
-templates_path = ['_templates']
-
-# The suffix(es) of source filenames.
-# You can specify multiple suffix as a list of string:
-#
-source_suffix = ['.rst', '.md']
-# source_suffix = '.rst'
-
-# The master toctree document.
-master_doc = 'index'
-
-# The language for content autogenerated by Sphinx. Refer to documentation
-# for a list of supported languages.
-#
-# This is also used if you do content translation via gettext catalogs.
-# Usually you set "language" from the command line for these cases.
-language = None
-
-# List of patterns, relative to source directory, that match files and
-# directories to ignore when looking for source files.
-# This pattern also affects html_static_path and html_extra_path.
-exclude_patterns = [u'_build', 'Thumbs.db', '.DS_Store']
-
-# The name of the Pygments (syntax highlighting) style to use.
-pygments_style = None
-
-
-# -- Options for HTML output -------------------------------------------------
-
-# The theme to use for HTML and HTML Help pages.  See the documentation for
-# a list of builtin themes.
-#
-# html_theme = 'alabaster'
-html_theme = 'bizstyle'
-
-# Theme options are theme-specific and customize the look and feel of a theme
-# further.  For a list of options available for each theme, see the
-# documentation.
-#
-# html_theme_options = {}
-
-# Add any paths that contain custom static files (such as style sheets) here,
-# relative to this directory. They are copied after the builtin static files,
-# so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ['_static']
-
-# Custom sidebar templates, must be a dictionary that maps document names
-# to template names.
-#
-# The default sidebars (for documents that don't match any pattern) are
-# defined by theme itself.  Builtin themes are using these templates by
-# default: ``['localtoc.html', 'relations.html', 'sourcelink.html',
-# 'searchbox.html']``.
-#
-# html_sidebars = {}
-
-
-# -- Options for HTMLHelp output ---------------------------------------------
-
-# Output file base name for HTML help builder.
-htmlhelp_basename = 'BINANAdoc'
-
-
-# -- Options for LaTeX output ------------------------------------------------
-
-latex_elements = {
-    # The paper size ('letterpaper' or 'a4paper').
-    #
-    # 'papersize': 'letterpaper',
-
-    # The font size ('10pt', '11pt' or '12pt').
-    #
-    # 'pointsize': '10pt',
-
-    # Additional stuff for the LaTeX preamble.
-    #
-    # 'preamble': '',
-
-    # Latex figure (float) alignment
-    #
-    # 'figure_align': 'htbp',
-}
-
-# Grouping the document tree into LaTeX files. List of tuples
-# (source start file, target name, title,
-#  author, documentclass [howto, manual, or own class]).
-latex_documents = [
-    (master_doc, 'BINANA.tex', u'BINANA Documentation',
-     u'Jacob D. Durrant', 'manual'),
-]
-
-
-# -- Options for manual page output ------------------------------------------
-
-# One entry per manual page. List of tuples
-# (source start file, name, description, authors, manual section).
-man_pages = [
-    (master_doc, 'binana', u'BINANA Documentation',
-     [author], 1)
-]
-
-
-# -- Options for Texinfo output ----------------------------------------------
-
-# Grouping the document tree into Texinfo files. List of tuples
-# (source start file, target name, title, author,
-#  dir menu entry, description, category)
-texinfo_documents = [
-    (master_doc, 'BINANA', u'BINANA Documentation',
-     author, 'BINANA', 'One line description of project.',
-     'Miscellaneous'),
-]
-
-
-# -- Options for Epub output -------------------------------------------------
-
-# Bibliographic Dublin Core info.
-epub_title = project
-
-# The unique identifier of the text. This can be a ISBN number
-# or the project homepage.
-#
-# epub_identifier = ''
-
-# A unique identification for the text.
-#
-# epub_uid = ''
-
-# A list of files that should not be packed into the epub file.
-epub_exclude_files = ['search.html']
-
-
-# -- Extension configuration -------------------------------------------------

docs/compile/index.rst

-.. BINANA documentation master file, created by
-   sphinx-quickstart on Thu Jul 22 02:20:10 2021. You can adapt this file
-   completely to your liking, but it should at least contain the root `toctree`
-   directive. You can add :caption: Technical Notes: to the toctree:
-
-Welcome to BINANA's documentation!
-==================================
-
-Technical notes
-===============
-
-.. toctree::
-   :maxdepth: 2
-
-   tmp.md
-
-Code documentation
-==================
-
-.. toctree::
-   :maxdepth: 1
-
-   _rst/modules
-
-Indices and tables
-==================
-
-* :ref:`genindex`
-* :ref:`modindex`
-* :ref:`search`