Commit cf25eaae authored by jdurrant's avatar jdurrant
Browse files

Added license info to files, etc.

parent cbb4d216
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# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
"""A few functions to output BINANA analysis."""
from binana.output import _directory
......
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
preface = "REMARK "
# __pragma__ ('skip')
......
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
import re
# __pragma__ ('skip')
......
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
from binana._utils.shim import _set_default
# __pragma__ ('skip')
......
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
import binana # Leave this for javascript conversion.
from binana import fs # Leave
from binana import load_ligand_receptor # Leave
......
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
\ No newline at end of file
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
# this file contains the CommandLineParameters class
# for binana.py
......
# BINANA is released under the GNU General Public License (see
# http://www.gnu.org/licenses/gpl.html). If you have any questions, comments,
# or suggestions, please don't hesitate to contact me, Jacob Durrant, at
# jdurrant [at] ucsd [dot] edu. If you use BINANA in your work, please cite
# Durrant, J. D. and J. A. McCammon (2011). "BINANA: A novel algorithm for
# ligand-binding characterization." J Mol Graph Model 29(6): 888-893.
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
import __future__
from binana.output import _write_main
......
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
\ No newline at end of file
# this file contains the Atom class
# for binana.py
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
# this file contains the Atom class for binana.py
import binana
from binana._structure.point import Point
......
# this file containd the class Mol
# for binana.py
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
# this file containd the class Mol for binana.py
import binana
import math
......
# this file contains the Point class
# for binana.py
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
# this file contains the Point class for binana.py
import math
import binana
from binana._utils.shim import r_just, round_to_thousandths_to_str
......
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
# Not putting shim here because should only be run from commandline/python (not
# javascript).
......
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
\ No newline at end of file
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
# this file contains the class MathFunctions and for binana.py
import math
import binana
......
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
# A number of python libraries aren't compatible with transcript. This file
# provides alternate functions.
......
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
from binana._utils.shim import _set_default
......
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
"""When used as a JavaScript library, BINANA cannot access the local file system
to save and load files. These functions save and read files to a fake in-memory
file system for use in the browser."""
......
# This file is part of BINANA, released under the Apache 2.0 License. See
# LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
# details. Copyright 2020 Jacob D. Durrant.
"""
This module contains functions that return information about various types of
interactions between a protein receptor and a small-molecule ligand.
......
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