Before removing cruft from old hydrogen/halogen-bond code.

web_app/src/binanajs/binana.interactions._flexibility.js

@@ -2,7 +2,7 @@
 // LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
 // details. Copyright 2020 Jacob D. Durrant.
 
-// Transcrypt'ed from Python, 2021-11-05 16:24:09
+// Transcrypt'ed from Python, 2021-11-09 00:25:33
 var binana = {};
 import {AssertionError, AttributeError, BaseException, DeprecationWarning, Exception, IndexError, IterableError, KeyError, NotImplementedError, RuntimeWarning, StopIteration, UserWarning, ValueError, Warning, __JsIterator__, __PyIterator__, __Terminal__, __add__, __and__, __call__, __class__, __envir__, __eq__, __floordiv__, __ge__, __get__, __getcm__, __getitem__, __getslice__, __getsm__, __gt__, __i__, __iadd__, __iand__, __idiv__, __ijsmod__, __ilshift__, __imatmul__, __imod__, __imul__, __in__, __init__, __ior__, __ipow__, __irshift__, __isub__, __ixor__, __jsUsePyNext__, __jsmod__, __k__, __kwargtrans__, __le__, __lshift__, __lt__, __matmul__, __mergefields__, __mergekwargtrans__, __mod__, __mul__, __ne__, __neg__, __nest__, __or__, __pow__, __pragma__, __proxy__, __pyUseJsNext__, __rshift__, __setitem__, __setproperty__, __setslice__, __sort__, __specialattrib__, __sub__, __super__, __t__, __terminal__, __truediv__, __withblock__, __xor__, abs, all, any, assert, bool, bytearray, bytes, callable, chr, copy, deepcopy, delattr, dict, dir, divmod, enumerate, filter, float, getattr, hasattr, input, int, isinstance, issubclass, len, list, map, max, min, object, ord, pow, print, property, py_TypeError, py_iter, py_metatype, py_next, py_reversed, py_typeof, range, repr, round, set, setattr, sorted, str, sum, tuple, zip} from './org.transcrypt.__runtime__.js';
 import {Mol} from './binana._structure.mol.js';

web_app/src/binanajs/binana.interactions._hydrogen_halogen_bonds.js

@@ -2,7 +2,7 @@
 // LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
 // details. Copyright 2020 Jacob D. Durrant.
 
-// Transcrypt'ed from Python, 2021-11-05 16:24:09
+// Transcrypt'ed from Python, 2021-11-09 00:25:33
 var __future__ = {};
 var binana = {};
 var math = {};
@@ -21,7 +21,20 @@ __nest__ (binana, '', __module_binana__);
 import {HYDROGEN_HALOGEN_BOND_ANGLE_CUTOFF, HYDROGEN_HALOGEN_BOND_DIST_CUTOFF} from './binana.interactions.default_params.js';
 import {_set_default} from './binana._utils.shim.js';
 var __name__ = 'binana.interactions._hydrogen_halogen_bonds';
-export var max_donor_X_dist = dict ({'H': 1.3, 'I': 2.04 * 1.4, 'BR': 1.86 * 1.4, 'Br': 1.86 * 1.4, 'CL': 1.71 * 1.4, 'Cl': 1.71 * 1.4, 'F': 1.33 * 1.4});
+export var _mimic_set_minus = function (set1, set2) {
+	for (var s2 of set2) {
+		var set1 = (function () {
+			var __accu0__ = [];
+			for (var s of set1) {
+				if (s [0] != s2 [0]) {
+					__accu0__.append (s);
+				}
+			}
+			return __accu0__;
+		}) ();
+	}
+	return set1;
+};
 export var get_hydrogen_or_halogen_bonds = function (ligand, receptor, dist_cutoff, angle_cutoff, hydrogen_bond) {
 	if (typeof dist_cutoff == 'undefined' || (dist_cutoff != null && dist_cutoff.hasOwnProperty ("__kwargtrans__"))) {;
 		var dist_cutoff = null;
@@ -32,45 +45,56 @@ export var get_hydrogen_or_halogen_bonds = function (ligand, receptor, dist_cuto
 	if (typeof hydrogen_bond == 'undefined' || (hydrogen_bond != null && hydrogen_bond.hasOwnProperty ("__kwargtrans__"))) {;
 		var hydrogen_bond = true;
 	};
-	var central_atoms = (hydrogen_bond ? ['H'] : ['I', 'BR', 'Br', 'CL', 'Cl', 'F']);
-	var dist_cutoff = _set_default (dist_cutoff, HYDROGEN_HALOGEN_BOND_DIST_CUTOFF);
-	var angle_cutoff = _set_default (angle_cutoff, HYDROGEN_HALOGEN_BOND_ANGLE_CUTOFF);
 	var hbonds = dict ({});
 	var pdb_hbonds = Mol ();
 	var hbonds_labels = [];
+	var dist_cutoff = _set_default (dist_cutoff, HYDROGEN_HALOGEN_BOND_DIST_CUTOFF);
+	var angle_cutoff = _set_default (angle_cutoff, HYDROGEN_HALOGEN_BOND_ANGLE_CUTOFF);
+	var lig_and_recep_have_hydrogens = ligand.has_hydrogens && receptor.has_hydrogens;
 	var ligand_receptor_dists = _get_ligand_receptor_dists (ligand, receptor);
-	for (var [ligand_atom, receptor_atom, dist] of ligand_receptor_dists) {
-		if (dist < dist_cutoff && __in__ (ligand_atom.element, ['O', 'N']) && __in__ (receptor_atom.element, ['O', 'N'])) {
-			var hydrogens = [];
-			for (var atm_index of ligand.all_atoms.py_keys ()) {
-				var element = ligand.all_atoms [atm_index].element;
-				if (__in__ (element, central_atoms)) {
-					var dist = ligand.all_atoms [atm_index].coordinates.dist_to (ligand_atom.coordinates);
-					if (dist < max_donor_X_dist [element]) {
-						ligand.all_atoms [atm_index].comment = 'LIGAND';
-						hydrogens.append (ligand.all_atoms [atm_index]);
-					}
-				}
+	var close_donors_acceptors = (function () {
+		var __accu0__ = [];
+		for (var [ligand_atom, receptor_atom, dist] of ligand_receptor_dists) {
+			if (dist < dist_cutoff && __in__ (ligand_atom.element, ['O', 'N']) && __in__ (receptor_atom.element, ['O', 'N'])) {
+				__accu0__.append ([ligand_atom, receptor_atom]);
 			}
-			for (var atm_index of receptor.all_atoms.py_keys ()) {
-				var element = receptor.all_atoms [atm_index].element;
-				if (__in__ (element, central_atoms)) {
-					var dist = receptor.all_atoms [atm_index].coordinates.dist_to (receptor_atom.coordinates);
-					if (dist < max_donor_X_dist [element]) {
-						receptor.all_atoms [atm_index].comment = 'RECEPTOR';
-						hydrogens.append (receptor.all_atoms [atm_index]);
-					}
-				}
+		}
+		return __accu0__;
+	}) ();
+	for (var [ligand_atom, receptor_atom] of close_donors_acceptors) {
+		var hbond_detected = false;
+		var lig_atm_hbond_infs = ligand.is_hbond_donor_acceptor (ligand_atom, hydrogen_bond);
+		var recep_atm_hbond_infs = receptor.is_hbond_donor_acceptor (receptor_atom, hydrogen_bond);
+		for (var lig_atm_hbond_inf of lig_atm_hbond_infs) {
+			if (hbond_detected) {
+				break;
 			}
-			for (var hydrogen of hydrogens) {
-				if (fabs (180 - (angle_between_three_points (ligand_atom.coordinates, hydrogen.coordinates, receptor_atom.coordinates) * 180.0) / math.pi) <= angle_cutoff) {
-					var hbonds_key = (((('HDONOR_' + hydrogen.comment) + '_') + receptor_atom.side_chain_or_backbone ()) + '_') + receptor_atom.structure;
-					pdb_hbonds.add_new_atom (ligand_atom.copy_of ());
-					pdb_hbonds.add_new_atom (hydrogen.copy_of ());
-					pdb_hbonds.add_new_atom (receptor_atom.copy_of ());
-					hashtable_entry_add_one (hbonds, hbonds_key);
-					hbonds_labels.append (tuple ([ligand_atom.string_id (), hydrogen.string_id (), receptor_atom.string_id (), hydrogen.comment]));
+			var __left0__ = lig_atm_hbond_inf;
+			var lig_donor_or_accept = __left0__ [0];
+			var lig_center_atom = __left0__ [1];
+			for (var recep_atm_hbond_inf of recep_atm_hbond_infs) {
+				var __left0__ = recep_atm_hbond_inf;
+				var accept_donor_or_accept = __left0__ [0];
+				var accept_center_atom = __left0__ [1];
+				if (lig_donor_or_accept == accept_donor_or_accept) {
+					continue;
+				}
+				var center_atom = (lig_donor_or_accept == 'DONOR' ? lig_center_atom : accept_center_atom);
+				if (lig_and_recep_have_hydrogens && hydrogen_bond) {
+					var angle = angle_between_three_points (ligand_atom.coordinates, center_atom.coordinates, receptor_atom.coordinates);
+					if (fabs (180 - (angle * 180.0) / math.pi) > angle_cutoff) {
+						continue;
+					}
 				}
+				var comment = (lig_donor_or_accept == 'ACCEPTOR' ? 'RECEPTOR' : 'LIGAND');
+				var hbonds_key = (((('HDONOR_' + comment) + '_') + receptor_atom.side_chain_or_backbone ()) + '_') + receptor_atom.structure;
+				pdb_hbonds.add_new_atom (ligand_atom.copy_of ());
+				pdb_hbonds.add_new_atom (center_atom.copy_of ());
+				pdb_hbonds.add_new_atom (receptor_atom.copy_of ());
+				hashtable_entry_add_one (hbonds, hbonds_key);
+				hbonds_labels.append (tuple ([ligand_atom.string_id (), center_atom.string_id (), receptor_atom.string_id (), comment]));
+				var hbond_detected = true;
+				break;
 			}
 		}
 	}

web_app/src/binanajs/binana.interactions._hydrophobics.js

@@ -2,7 +2,7 @@
 // LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
 // details. Copyright 2020 Jacob D. Durrant.
 
-// Transcrypt'ed from Python, 2021-11-05 16:24:09
+// Transcrypt'ed from Python, 2021-11-09 00:25:33
 var binana = {};
 import {AssertionError, AttributeError, BaseException, DeprecationWarning, Exception, IndexError, IterableError, KeyError, NotImplementedError, RuntimeWarning, StopIteration, UserWarning, ValueError, Warning, __JsIterator__, __PyIterator__, __Terminal__, __add__, __and__, __call__, __class__, __envir__, __eq__, __floordiv__, __ge__, __get__, __getcm__, __getitem__, __getslice__, __getsm__, __gt__, __i__, __iadd__, __iand__, __idiv__, __ijsmod__, __ilshift__, __imatmul__, __imod__, __imul__, __in__, __init__, __ior__, __ipow__, __irshift__, __isub__, __ixor__, __jsUsePyNext__, __jsmod__, __k__, __kwargtrans__, __le__, __lshift__, __lt__, __matmul__, __mergefields__, __mergekwargtrans__, __mod__, __mul__, __ne__, __neg__, __nest__, __or__, __pow__, __pragma__, __proxy__, __pyUseJsNext__, __rshift__, __setitem__, __setproperty__, __setslice__, __sort__, __specialattrib__, __sub__, __super__, __t__, __terminal__, __truediv__, __withblock__, __xor__, abs, all, any, assert, bool, bytearray, bytes, callable, chr, copy, deepcopy, delattr, dict, dir, divmod, enumerate, filter, float, getattr, hasattr, input, int, isinstance, issubclass, len, list, map, max, min, object, ord, pow, print, property, py_TypeError, py_iter, py_metatype, py_next, py_reversed, py_typeof, range, repr, round, set, setattr, sorted, str, sum, tuple, zip} from './org.transcrypt.__runtime__.js';
 import {Mol} from './binana._structure.mol.js';

web_app/src/binanajs/binana.interactions._ligand_atom_types.js

@@ -2,7 +2,7 @@
 // LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
 // details. Copyright 2020 Jacob D. Durrant.
 
-// Transcrypt'ed from Python, 2021-11-05 16:24:09
+// Transcrypt'ed from Python, 2021-11-09 00:25:33
 var binana = {};
 import {AssertionError, AttributeError, BaseException, DeprecationWarning, Exception, IndexError, IterableError, KeyError, NotImplementedError, RuntimeWarning, StopIteration, UserWarning, ValueError, Warning, __JsIterator__, __PyIterator__, __Terminal__, __add__, __and__, __call__, __class__, __envir__, __eq__, __floordiv__, __ge__, __get__, __getcm__, __getitem__, __getslice__, __getsm__, __gt__, __i__, __iadd__, __iand__, __idiv__, __ijsmod__, __ilshift__, __imatmul__, __imod__, __imul__, __in__, __init__, __ior__, __ipow__, __irshift__, __isub__, __ixor__, __jsUsePyNext__, __jsmod__, __k__, __kwargtrans__, __le__, __lshift__, __lt__, __matmul__, __mergefields__, __mergekwargtrans__, __mod__, __mul__, __ne__, __neg__, __nest__, __or__, __pow__, __pragma__, __proxy__, __pyUseJsNext__, __rshift__, __setitem__, __setproperty__, __setslice__, __sort__, __specialattrib__, __sub__, __super__, __t__, __terminal__, __truediv__, __withblock__, __xor__, abs, all, any, assert, bool, bytearray, bytes, callable, chr, copy, deepcopy, delattr, dict, dir, divmod, enumerate, filter, float, getattr, hasattr, input, int, isinstance, issubclass, len, list, map, max, min, object, ord, pow, print, property, py_TypeError, py_iter, py_metatype, py_next, py_reversed, py_typeof, range, repr, round, set, setattr, sorted, str, sum, tuple, zip} from './org.transcrypt.__runtime__.js';
 import {hashtable_entry_add_one, list_alphebetize_and_combine} from './binana._utils.utils.js';

web_app/src/binanajs/binana.interactions._pi_pi.js

@@ -2,7 +2,7 @@
 // LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
 // details. Copyright 2020 Jacob D. Durrant.
 
-// Transcrypt'ed from Python, 2021-11-05 16:24:09
+// Transcrypt'ed from Python, 2021-11-09 00:25:33
 var binana = {};
 import {AssertionError, AttributeError, BaseException, DeprecationWarning, Exception, IndexError, IterableError, KeyError, NotImplementedError, RuntimeWarning, StopIteration, UserWarning, ValueError, Warning, __JsIterator__, __PyIterator__, __Terminal__, __add__, __and__, __call__, __class__, __envir__, __eq__, __floordiv__, __ge__, __get__, __getcm__, __getitem__, __getslice__, __getsm__, __gt__, __i__, __iadd__, __iand__, __idiv__, __ijsmod__, __ilshift__, __imatmul__, __imod__, __imul__, __in__, __init__, __ior__, __ipow__, __irshift__, __isub__, __ixor__, __jsUsePyNext__, __jsmod__, __k__, __kwargtrans__, __le__, __lshift__, __lt__, __matmul__, __mergefields__, __mergekwargtrans__, __mod__, __mul__, __ne__, __neg__, __nest__, __or__, __pow__, __pragma__, __proxy__, __pyUseJsNext__, __rshift__, __setitem__, __setproperty__, __setslice__, __sort__, __specialattrib__, __sub__, __super__, __t__, __terminal__, __truediv__, __withblock__, __xor__, abs, all, any, assert, bool, bytearray, bytes, callable, chr, copy, deepcopy, delattr, dict, dir, divmod, enumerate, filter, float, getattr, hasattr, input, int, isinstance, issubclass, len, list, map, max, min, object, ord, pow, print, property, py_TypeError, py_iter, py_metatype, py_next, py_reversed, py_typeof, range, repr, round, set, setattr, sorted, str, sum, tuple, zip} from './org.transcrypt.__runtime__.js';
 import {fabs} from './binana._utils.shim.js';

web_app/src/binanajs/binana.interactions._salt_bridges.js

@@ -2,7 +2,7 @@
 // LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
 // details. Copyright 2020 Jacob D. Durrant.
 
-// Transcrypt'ed from Python, 2021-11-05 16:24:09
+// Transcrypt'ed from Python, 2021-11-09 00:25:33
 var binana = {};
 import {AssertionError, AttributeError, BaseException, DeprecationWarning, Exception, IndexError, IterableError, KeyError, NotImplementedError, RuntimeWarning, StopIteration, UserWarning, ValueError, Warning, __JsIterator__, __PyIterator__, __Terminal__, __add__, __and__, __call__, __class__, __envir__, __eq__, __floordiv__, __ge__, __get__, __getcm__, __getitem__, __getslice__, __getsm__, __gt__, __i__, __iadd__, __iand__, __idiv__, __ijsmod__, __ilshift__, __imatmul__, __imod__, __imul__, __in__, __init__, __ior__, __ipow__, __irshift__, __isub__, __ixor__, __jsUsePyNext__, __jsmod__, __k__, __kwargtrans__, __le__, __lshift__, __lt__, __matmul__, __mergefields__, __mergekwargtrans__, __mod__, __mul__, __ne__, __neg__, __nest__, __or__, __pow__, __pragma__, __proxy__, __pyUseJsNext__, __rshift__, __setitem__, __setproperty__, __setslice__, __sort__, __specialattrib__, __sub__, __super__, __t__, __terminal__, __truediv__, __withblock__, __xor__, abs, all, any, assert, bool, bytearray, bytes, callable, chr, copy, deepcopy, delattr, dict, dir, divmod, enumerate, filter, float, getattr, hasattr, input, int, isinstance, issubclass, len, list, map, max, min, object, ord, pow, print, property, py_TypeError, py_iter, py_metatype, py_next, py_reversed, py_typeof, range, repr, round, set, setattr, sorted, str, sum, tuple, zip} from './org.transcrypt.__runtime__.js';
 import {Mol} from './binana._structure.mol.js';
@@ -30,24 +30,28 @@ export var get_salt_bridges = function (ligand, receptor, cutoff) {
 				}
 				var key = 'SALT-BRIDGE_' + structure;
 				for (var index of receptor_charge.indices) {
-					pdb_salt_bridges.add_new_atom (receptor.all_atoms [index].copy_of ());
+					var idx = int (index);
+					var atom = receptor.all_atoms [idx];
+					pdb_salt_bridges.add_new_atom (atom.copy_of ());
 				}
 				for (var index of ligand_charge.indices) {
-					pdb_salt_bridges.add_new_atom (ligand.all_atoms [index].copy_of ());
+					var idx = int (index);
+					var atom = ligand.all_atoms [idx];
+					pdb_salt_bridges.add_new_atom (atom.copy_of ());
 				}
 				hashtable_entry_add_one (salt_bridges, key);
 				salt_bridge_labels.append (tuple ([('[' + ' / '.join ((function () {
 					var __accu0__ = [];
 					for (var index of ligand_charge.indices) {
-						__accu0__.append (ligand.all_atoms [index].string_id ());
+						__accu0__.append (ligand.all_atoms [int (index)].string_id ());
 					}
-					return __accu0__;
+					return py_iter (__accu0__);
 				}) ())) + ']', ('[' + ' / '.join ((function () {
 					var __accu0__ = [];
 					for (var index of receptor_charge.indices) {
-						__accu0__.append (receptor.all_atoms [index].string_id ());
+						__accu0__.append (receptor.all_atoms [int (index)].string_id ());
 					}
-					return __accu0__;
+					return py_iter (__accu0__);
 				}) ())) + ']']));
 			}
 		}

web_app/src/binanajs/binana.interactions.default_params.js

@@ -2,7 +2,7 @@
 // LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
 // details. Copyright 2020 Jacob D. Durrant.
 
-// Transcrypt'ed from Python, 2021-11-05 16:24:08
+// Transcrypt'ed from Python, 2021-11-09 00:25:32
 import {AssertionError, AttributeError, BaseException, DeprecationWarning, Exception, IndexError, IterableError, KeyError, NotImplementedError, RuntimeWarning, StopIteration, UserWarning, ValueError, Warning, __JsIterator__, __PyIterator__, __Terminal__, __add__, __and__, __call__, __class__, __envir__, __eq__, __floordiv__, __ge__, __get__, __getcm__, __getitem__, __getslice__, __getsm__, __gt__, __i__, __iadd__, __iand__, __idiv__, __ijsmod__, __ilshift__, __imatmul__, __imod__, __imul__, __in__, __init__, __ior__, __ipow__, __irshift__, __isub__, __ixor__, __jsUsePyNext__, __jsmod__, __k__, __kwargtrans__, __le__, __lshift__, __lt__, __matmul__, __mergefields__, __mergekwargtrans__, __mod__, __mul__, __ne__, __neg__, __nest__, __or__, __pow__, __pragma__, __proxy__, __pyUseJsNext__, __rshift__, __setitem__, __setproperty__, __setslice__, __sort__, __specialattrib__, __sub__, __super__, __t__, __terminal__, __truediv__, __withblock__, __xor__, abs, all, any, assert, bool, bytearray, bytes, callable, chr, copy, deepcopy, delattr, dict, dir, divmod, enumerate, filter, float, getattr, hasattr, input, int, isinstance, issubclass, len, list, map, max, min, object, ord, pow, print, property, py_TypeError, py_iter, py_metatype, py_next, py_reversed, py_typeof, range, repr, round, set, setattr, sorted, str, sum, tuple, zip} from './org.transcrypt.__runtime__.js';
 var __name__ = 'binana.interactions.default_params';
 export var CLOSE_CONTACTS_DIST1_CUTOFF = 2.5;

web_app/src/binanajs/binana.interactions.js

@@ -2,7 +2,7 @@
 // LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
 // details. Copyright 2020 Jacob D. Durrant.
 
-// Transcrypt'ed from Python, 2021-11-05 16:24:09
+// Transcrypt'ed from Python, 2021-11-09 00:25:33
 var binana = {};
 import {AssertionError, AttributeError, BaseException, DeprecationWarning, Exception, IndexError, IterableError, KeyError, NotImplementedError, RuntimeWarning, StopIteration, UserWarning, ValueError, Warning, __JsIterator__, __PyIterator__, __Terminal__, __add__, __and__, __call__, __class__, __envir__, __eq__, __floordiv__, __ge__, __get__, __getcm__, __getitem__, __getslice__, __getsm__, __gt__, __i__, __iadd__, __iand__, __idiv__, __ijsmod__, __ilshift__, __imatmul__, __imod__, __imul__, __in__, __init__, __ior__, __ipow__, __irshift__, __isub__, __ixor__, __jsUsePyNext__, __jsmod__, __k__, __kwargtrans__, __le__, __lshift__, __lt__, __matmul__, __mergefields__, __mergekwargtrans__, __mod__, __mul__, __ne__, __neg__, __nest__, __or__, __pow__, __pragma__, __proxy__, __pyUseJsNext__, __rshift__, __setitem__, __setproperty__, __setslice__, __sort__, __specialattrib__, __sub__, __super__, __t__, __terminal__, __truediv__, __withblock__, __xor__, abs, all, any, assert, bool, bytearray, bytes, callable, chr, copy, deepcopy, delattr, dict, dir, divmod, enumerate, filter, float, getattr, hasattr, input, int, isinstance, issubclass, len, list, map, max, min, object, ord, pow, print, property, py_TypeError, py_iter, py_metatype, py_next, py_reversed, py_typeof, range, repr, round, set, setattr, sorted, str, sum, tuple, zip} from './org.transcrypt.__runtime__.js';
 import * as _closest from './binana.interactions._closest.js';
@@ -22,7 +22,7 @@ __nest__ (binana, '', __module_binana__);
 import {ACTIVE_SITE_FLEXIBILITY_DIST_CUTOFF, CATION_PI_DIST_CUTOFF, CLOSE_CONTACTS_DIST1_CUTOFF, CLOSE_CONTACTS_DIST2_CUTOFF, ELECTROSTATIC_DIST_CUTOFF, HYDROGEN_HALOGEN_BOND_ANGLE_CUTOFF, HYDROGEN_HALOGEN_BOND_DIST_CUTOFF, HYDROPHOBIC_DIST_CUTOFF, PI_PADDING_DIST, PI_PI_INTERACTING_DIST_CUTOFF, PI_STACKING_ANGLE_TOLERANCE, SALT_BRIDGE_DIST_CUTOFF, T_STACKING_ANGLE_TOLERANCE, T_STACKING_CLOSEST_DIST_CUTOFF} from './binana.interactions.default_params.js';
 import {_set_default} from './binana._utils.shim.js';
 import * as default_params from './binana.interactions.default_params.js';
-export {CLOSE_CONTACTS_DIST2_CUTOFF, _cat_pi, PI_PADDING_DIST, _flexibility, CATION_PI_DIST_CUTOFF, _closest, _electrostatic_energies, default_params, HYDROPHOBIC_DIST_CUTOFF, CLOSE_CONTACTS_DIST1_CUTOFF, SALT_BRIDGE_DIST_CUTOFF, _hydrophobics, T_STACKING_ANGLE_TOLERANCE, _close, _ligand_atom_types, HYDROGEN_HALOGEN_BOND_ANGLE_CUTOFF, ACTIVE_SITE_FLEXIBILITY_DIST_CUTOFF, ELECTROSTATIC_DIST_CUTOFF, _set_default, PI_PI_INTERACTING_DIST_CUTOFF, _salt_bridges, HYDROGEN_HALOGEN_BOND_DIST_CUTOFF, T_STACKING_CLOSEST_DIST_CUTOFF, PI_STACKING_ANGLE_TOLERANCE, _hydrogen_halogen_bonds, _pi_pi};
+export {HYDROPHOBIC_DIST_CUTOFF, default_params, T_STACKING_ANGLE_TOLERANCE, HYDROGEN_HALOGEN_BOND_ANGLE_CUTOFF, PI_PADDING_DIST, _pi_pi, _salt_bridges, PI_STACKING_ANGLE_TOLERANCE, ACTIVE_SITE_FLEXIBILITY_DIST_CUTOFF, _hydrophobics, _electrostatic_energies, _flexibility, _hydrogen_halogen_bonds, T_STACKING_CLOSEST_DIST_CUTOFF, CLOSE_CONTACTS_DIST1_CUTOFF, CLOSE_CONTACTS_DIST2_CUTOFF, SALT_BRIDGE_DIST_CUTOFF, _ligand_atom_types, _closest, _close, CATION_PI_DIST_CUTOFF, PI_PI_INTERACTING_DIST_CUTOFF, HYDROGEN_HALOGEN_BOND_DIST_CUTOFF, _set_default, _cat_pi, ELECTROSTATIC_DIST_CUTOFF};
 var __name__ = 'binana.interactions';
 export var get_cation_pi = function (ligand, receptor, cutoff, pi_padding) {
 	if (typeof cutoff == 'undefined' || (cutoff != null && cutoff.hasOwnProperty ("__kwargtrans__"))) {;

web_app/src/binanajs/binana.js

@@ -2,7 +2,7 @@
 // LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
 // details. Copyright 2020 Jacob D. Durrant.
 
-// Transcrypt'ed from Python, 2021-11-05 16:24:08
+// Transcrypt'ed from Python, 2021-11-09 00:25:32
 var binana = {};
 import {AssertionError, AttributeError, BaseException, DeprecationWarning, Exception, IndexError, IterableError, KeyError, NotImplementedError, RuntimeWarning, StopIteration, UserWarning, ValueError, Warning, __JsIterator__, __PyIterator__, __Terminal__, __add__, __and__, __call__, __class__, __envir__, __eq__, __floordiv__, __ge__, __get__, __getcm__, __getitem__, __getslice__, __getsm__, __gt__, __i__, __iadd__, __iand__, __idiv__, __ijsmod__, __ilshift__, __imatmul__, __imod__, __imul__, __in__, __init__, __ior__, __ipow__, __irshift__, __isub__, __ixor__, __jsUsePyNext__, __jsmod__, __k__, __kwargtrans__, __le__, __lshift__, __lt__, __matmul__, __mergefields__, __mergekwargtrans__, __mod__, __mul__, __ne__, __neg__, __nest__, __or__, __pow__, __pragma__, __proxy__, __pyUseJsNext__, __rshift__, __setitem__, __setproperty__, __setslice__, __sort__, __specialattrib__, __sub__, __super__, __t__, __terminal__, __truediv__, __withblock__, __xor__, abs, all, any, assert, bool, bytearray, bytes, callable, chr, copy, deepcopy, delattr, dict, dir, divmod, enumerate, filter, float, getattr, hasattr, input, int, isinstance, issubclass, len, list, map, max, min, object, ord, pow, print, property, py_TypeError, py_iter, py_metatype, py_next, py_reversed, py_typeof, range, repr, round, set, setattr, sorted, str, sum, tuple, zip} from './org.transcrypt.__runtime__.js';
 import * as _get_params from './binana._cli_params._get_params.js';
@@ -13,7 +13,7 @@ import * as load_ligand_receptor from './binana.load_ligand_receptor.js';
 import * as fs from './binana.fs.js';
 import * as __module_binana__ from './binana.js';
 __nest__ (binana, '', __module_binana__);
-export {fs, output, _get_params, interactions, load_ligand_receptor, _start};
+export {fs, _get_params, _start, output, interactions, load_ligand_receptor};
 var __name__ = '__main__';
 export var _sys = binana.sys;
 export var run = function (args) {

web_app/src/binanajs/binana.load_ligand_receptor.js

@@ -2,7 +2,7 @@
 // LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
 // details. Copyright 2020 Jacob D. Durrant.
 
-// Transcrypt'ed from Python, 2021-11-05 16:24:08
+// Transcrypt'ed from Python, 2021-11-09 00:25:32
 var binana = {};
 var math = {};
 import {AssertionError, AttributeError, BaseException, DeprecationWarning, Exception, IndexError, IterableError, KeyError, NotImplementedError, RuntimeWarning, StopIteration, UserWarning, ValueError, Warning, __JsIterator__, __PyIterator__, __Terminal__, __add__, __and__, __call__, __class__, __envir__, __eq__, __floordiv__, __ge__, __get__, __getcm__, __getitem__, __getslice__, __getsm__, __gt__, __i__, __iadd__, __iand__, __idiv__, __ijsmod__, __ilshift__, __imatmul__, __imod__, __imul__, __in__, __init__, __ior__, __ipow__, __irshift__, __isub__, __ixor__, __jsUsePyNext__, __jsmod__, __k__, __kwargtrans__, __le__, __lshift__, __lt__, __matmul__, __mergefields__, __mergekwargtrans__, __mod__, __mul__, __ne__, __neg__, __nest__, __or__, __pow__, __pragma__, __proxy__, __pyUseJsNext__, __rshift__, __setitem__, __setproperty__, __setslice__, __sort__, __specialattrib__, __sub__, __super__, __t__, __terminal__, __truediv__, __withblock__, __xor__, abs, all, any, assert, bool, bytearray, bytes, callable, chr, copy, deepcopy, delattr, dict, dir, divmod, enumerate, filter, float, getattr, hasattr, input, int, isinstance, issubclass, len, list, map, max, min, object, ord, pow, print, property, py_TypeError, py_iter, py_metatype, py_next, py_reversed, py_typeof, range, repr, round, set, setattr, sorted, str, sum, tuple, zip} from './org.transcrypt.__runtime__.js';
@@ -13,7 +13,7 @@ import * as __module_math__ from './math.js';
 __nest__ (math, '', __module_math__);
 import * as __module_binana__ from './binana.js';
 __nest__ (binana, '', __module_binana__);
-export {_Point, _Mol, _math_functions};
+export {_math_functions, _Point, _Mol};
 var __name__ = 'binana.load_ligand_receptor';
 export var _ligand_receptor_dists = null;
 export var _ligand_receptor_aromatic_dists = null;

web_app/src/binanajs/binana.output._directory.js

@@ -2,7 +2,7 @@
 // LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
 // details. Copyright 2020 Jacob D. Durrant.
 
-// Transcrypt'ed from Python, 2021-11-05 16:24:10
+// Transcrypt'ed from Python, 2021-11-09 00:25:34
 var binana = {};
 import {AssertionError, AttributeError, BaseException, DeprecationWarning, Exception, IndexError, IterableError, KeyError, NotImplementedError, RuntimeWarning, StopIteration, UserWarning, ValueError, Warning, __JsIterator__, __PyIterator__, __Terminal__, __add__, __and__, __call__, __class__, __envir__, __eq__, __floordiv__, __ge__, __get__, __getcm__, __getitem__, __getslice__, __getsm__, __gt__, __i__, __iadd__, __iand__, __idiv__, __ijsmod__, __ilshift__, __imatmul__, __imod__, __imul__, __in__, __init__, __ior__, __ipow__, __irshift__, __isub__, __ixor__, __jsUsePyNext__, __jsmod__, __k__, __kwargtrans__, __le__, __lshift__, __lt__, __matmul__, __mergefields__, __mergekwargtrans__, __mod__, __mul__, __ne__, __neg__, __nest__, __or__, __pow__, __pragma__, __proxy__, __pyUseJsNext__, __rshift__, __setitem__, __setproperty__, __setslice__, __sort__, __specialattrib__, __sub__, __super__, __t__, __terminal__, __truediv__, __withblock__, __xor__, abs, all, any, assert, bool, bytearray, bytes, callable, chr, copy, deepcopy, delattr, dict, dir, divmod, enumerate, filter, float, getattr, hasattr, input, int, isinstance, issubclass, len, list, map, max, min, object, ord, pow, print, property, py_TypeError, py_iter, py_metatype, py_next, py_reversed, py_typeof, range, repr, round, set, setattr, sorted, str, sum, tuple, zip} from './org.transcrypt.__runtime__.js';
 import * as shim from './binana._utils.shim.js';
@@ -10,7 +10,7 @@ import * as __module_binana__ from './binana.js';
 __nest__ (binana, '', __module_binana__);
 import * as vmd_state from './binana.output._directory.vmd_state.js';
 import * as pdbs from './binana.output._directory.pdbs.js';
-export {vmd_state, pdbs, shim};
+export {pdbs, vmd_state, shim};
 var __name__ = 'binana.output._directory';
 export var os = shim;
 export var make_directory_output = function (parameters, closest, close, active_site_flexibility, hydrophobics, hydrogen_bonds, halogen_bonds, pi_pi, cat_pi, salt_bridges, ligand, receptor) {

web_app/src/binanajs/binana.output._directory.pdbs.js

@@ -2,7 +2,7 @@
 // LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
 // details. Copyright 2020 Jacob D. Durrant.
 
-// Transcrypt'ed from Python, 2021-11-05 16:24:10
+// Transcrypt'ed from Python, 2021-11-09 00:25:34
 import {AssertionError, AttributeError, BaseException, DeprecationWarning, Exception, IndexError, IterableError, KeyError, NotImplementedError, RuntimeWarning, StopIteration, UserWarning, ValueError, Warning, __JsIterator__, __PyIterator__, __Terminal__, __add__, __and__, __call__, __class__, __envir__, __eq__, __floordiv__, __ge__, __get__, __getcm__, __getitem__, __getslice__, __getsm__, __gt__, __i__, __iadd__, __iand__, __idiv__, __ijsmod__, __ilshift__, __imatmul__, __imod__, __imul__, __in__, __init__, __ior__, __ipow__, __irshift__, __isub__, __ixor__, __jsUsePyNext__, __jsmod__, __k__, __kwargtrans__, __le__, __lshift__, __lt__, __matmul__, __mergefields__, __mergekwargtrans__, __mod__, __mul__, __ne__, __neg__, __nest__, __or__, __pow__, __pragma__, __proxy__, __pyUseJsNext__, __rshift__, __setitem__, __setproperty__, __setslice__, __sort__, __specialattrib__, __sub__, __super__, __t__, __terminal__, __truediv__, __withblock__, __xor__, abs, all, any, assert, bool, bytearray, bytes, callable, chr, copy, deepcopy, delattr, dict, dir, divmod, enumerate, filter, float, getattr, hasattr, input, int, isinstance, issubclass, len, list, map, max, min, object, ord, pow, print, property, py_TypeError, py_iter, py_metatype, py_next, py_reversed, py_typeof, range, repr, round, set, setattr, sorted, str, sum, tuple, zip} from './org.transcrypt.__runtime__.js';
 var __name__ = 'binana.output._directory.pdbs';
 export var output_dir_pdbs = function (pdb_closest_contacts, parameters, pdb_close_contacts, pdb_contacts_alpha_helix, pdb_contacts_beta_sheet, pdb_contacts_other_2nd_structure, pdb_back_bone, pdb_side_chain, pdb_hydrophobic, pdb_hbonds, pdb_halbonds, pdb_pistack, pdb_pi_T, pdb_pi_cat, pdb_salt_bridges, ligand, receptor) {

web_app/src/binanajs/binana.output._directory.vmd_state.js

@@ -2,7 +2,7 @@
 // LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
 // details. Copyright 2020 Jacob D. Durrant.
 
-// Transcrypt'ed from Python, 2021-11-05 16:24:10
+// Transcrypt'ed from Python, 2021-11-09 00:25:34
 var binana = {};
 import {AssertionError, AttributeError, BaseException, DeprecationWarning, Exception, IndexError, IterableError, KeyError, NotImplementedError, RuntimeWarning, StopIteration, UserWarning, ValueError, Warning, __JsIterator__, __PyIterator__, __Terminal__, __add__, __and__, __call__, __class__, __envir__, __eq__, __floordiv__, __ge__, __get__, __getcm__, __getitem__, __getslice__, __getsm__, __gt__, __i__, __iadd__, __iand__, __idiv__, __ijsmod__, __ilshift__, __imatmul__, __imod__, __imul__, __in__, __init__, __ior__, __ipow__, __irshift__, __isub__, __ixor__, __jsUsePyNext__, __jsmod__, __k__, __kwargtrans__, __le__, __lshift__, __lt__, __matmul__, __mergefields__, __mergekwargtrans__, __mod__, __mul__, __ne__, __neg__, __nest__, __or__, __pow__, __pragma__, __proxy__, __pyUseJsNext__, __rshift__, __setitem__, __setproperty__, __setslice__, __sort__, __specialattrib__, __sub__, __super__, __t__, __terminal__, __truediv__, __withblock__, __xor__, abs, all, any, assert, bool, bytearray, bytes, callable, chr, copy, deepcopy, delattr, dict, dir, divmod, enumerate, filter, float, getattr, hasattr, input, int, isinstance, issubclass, len, list, map, max, min, object, ord, pow, print, property, py_TypeError, py_iter, py_metatype, py_next, py_reversed, py_typeof, range, repr, round, set, setattr, sorted, str, sum, tuple, zip} from './org.transcrypt.__runtime__.js';
 import {OpenFile} from './binana._utils.shim.js';

web_app/src/binanajs/binana.output._log.js

@@ -2,7 +2,7 @@
 // LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
 // details. Copyright 2020 Jacob D. Durrant.
 
-// Transcrypt'ed from Python, 2021-11-05 16:24:09
+// Transcrypt'ed from Python, 2021-11-09 00:25:34
 var binana = {};
 import {AssertionError, AttributeError, BaseException, DeprecationWarning, Exception, IndexError, IterableError, KeyError, NotImplementedError, RuntimeWarning, StopIteration, UserWarning, ValueError, Warning, __JsIterator__, __PyIterator__, __Terminal__, __add__, __and__, __call__, __class__, __envir__, __eq__, __floordiv__, __ge__, __get__, __getcm__, __getitem__, __getslice__, __getsm__, __gt__, __i__, __iadd__, __iand__, __idiv__, __ijsmod__, __ilshift__, __imatmul__, __imod__, __imul__, __in__, __init__, __ior__, __ipow__, __irshift__, __isub__, __ixor__, __jsUsePyNext__, __jsmod__, __k__, __kwargtrans__, __le__, __lshift__, __lt__, __matmul__, __mergefields__, __mergekwargtrans__, __mod__, __mul__, __ne__, __neg__, __nest__, __or__, __pow__, __pragma__, __proxy__, __pyUseJsNext__, __rshift__, __setitem__, __setproperty__, __setslice__, __sort__, __specialattrib__, __sub__, __super__, __t__, __terminal__, __truediv__, __withblock__, __xor__, abs, all, any, assert, bool, bytearray, bytes, callable, chr, copy, deepcopy, delattr, dict, dir, divmod, enumerate, filter, float, getattr, hasattr, input, int, isinstance, issubclass, len, list, map, max, min, object, ord, pow, print, property, py_TypeError, py_iter, py_metatype, py_next, py_reversed, py_typeof, range, repr, round, set, setattr, sorted, str, sum, tuple, zip} from './org.transcrypt.__runtime__.js';
 import * as json from './binana._utils.shim.js';

web_app/src/binanajs/binana.output.dictionary.js

@@ -2,7 +2,7 @@
 // LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
 // details. Copyright 2020 Jacob D. Durrant.
 
-// Transcrypt'ed from Python, 2021-11-05 16:24:09
+// Transcrypt'ed from Python, 2021-11-09 00:25:34
 var binana = {};
 var re = {};
 import {AssertionError, AttributeError, BaseException, DeprecationWarning, Exception, IndexError, IterableError, KeyError, NotImplementedError, RuntimeWarning, StopIteration, UserWarning, ValueError, Warning, __JsIterator__, __PyIterator__, __Terminal__, __add__, __and__, __call__, __class__, __envir__, __eq__, __floordiv__, __ge__, __get__, __getcm__, __getitem__, __getslice__, __getsm__, __gt__, __i__, __iadd__, __iand__, __idiv__, __ijsmod__, __ilshift__, __imatmul__, __imod__, __imul__, __in__, __init__, __ior__, __ipow__, __irshift__, __isub__, __ixor__, __jsUsePyNext__, __jsmod__, __k__, __kwargtrans__, __le__, __lshift__, __lt__, __matmul__, __mergefields__, __mergekwargtrans__, __mod__, __mul__, __ne__, __neg__, __nest__, __or__, __pow__, __pragma__, __proxy__, __pyUseJsNext__, __rshift__, __setitem__, __setproperty__, __setslice__, __sort__, __specialattrib__, __sub__, __super__, __t__, __terminal__, __truediv__, __withblock__, __xor__, abs, all, any, assert, bool, bytearray, bytes, callable, chr, copy, deepcopy, delattr, dict, dir, divmod, enumerate, filter, float, getattr, hasattr, input, int, isinstance, issubclass, len, list, map, max, min, object, ord, pow, print, property, py_TypeError, py_iter, py_metatype, py_next, py_reversed, py_typeof, range, repr, round, set, setattr, sorted, str, sum, tuple, zip} from './org.transcrypt.__runtime__.js';

web_app/src/binanajs/binana.output.js

@@ -2,7 +2,7 @@
 // LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
 // details. Copyright 2020 Jacob D. Durrant.
 
-// Transcrypt'ed from Python, 2021-11-05 16:24:09
+// Transcrypt'ed from Python, 2021-11-09 00:25:33
 var binana = {};
 import {AssertionError, AttributeError, BaseException, DeprecationWarning, Exception, IndexError, IterableError, KeyError, NotImplementedError, RuntimeWarning, StopIteration, UserWarning, ValueError, Warning, __JsIterator__, __PyIterator__, __Terminal__, __add__, __and__, __call__, __class__, __envir__, __eq__, __floordiv__, __ge__, __get__, __getcm__, __getitem__, __getslice__, __getsm__, __gt__, __i__, __iadd__, __iand__, __idiv__, __ijsmod__, __ilshift__, __imatmul__, __imod__, __imul__, __in__, __init__, __ior__, __ipow__, __irshift__, __isub__, __ixor__, __jsUsePyNext__, __jsmod__, __k__, __kwargtrans__, __le__, __lshift__, __lt__, __matmul__, __mergefields__, __mergekwargtrans__, __mod__, __mul__, __ne__, __neg__, __nest__, __or__, __pow__, __pragma__, __proxy__, __pyUseJsNext__, __rshift__, __setitem__, __setproperty__, __setslice__, __sort__, __specialattrib__, __sub__, __super__, __t__, __terminal__, __truediv__, __withblock__, __xor__, abs, all, any, assert, bool, bytearray, bytes, callable, chr, copy, deepcopy, delattr, dict, dir, divmod, enumerate, filter, float, getattr, hasattr, input, int, isinstance, issubclass, len, list, map, max, min, object, ord, pow, print, property, py_TypeError, py_iter, py_metatype, py_next, py_reversed, py_typeof, range, repr, round, set, setattr, sorted, str, sum, tuple, zip} from './org.transcrypt.__runtime__.js';
 import {OpenFile as _openFile} from './binana._utils.shim.js';
@@ -13,7 +13,7 @@ import * as pdb_file from './binana.output.pdb_file.js';
 import * as _log from './binana.output._log.js';
 import * as dictionary from './binana.output.dictionary.js';
 import * as _directory from './binana.output._directory.js';
-export {_directory, _openFile, dictionary, _json, pdb_file, _log};
+export {_openFile, _directory, _json, dictionary, pdb_file, _log};
 var __name__ = 'binana.output';
 export var _write_main = function (parameters, ligand, receptor, closest, close, hydrophobics, hydrogen_bonds, halogen_bonds, salt_bridges, pi_pi, cat_pi, electrostatic_energies, active_site_flexibility, ligand_atom_types) {
 	var json_output = binana.output.dictionary.collect (closest, close, hydrophobics, hydrogen_bonds, halogen_bonds, salt_bridges, pi_pi, cat_pi, electrostatic_energies, active_site_flexibility, ligand_atom_types, __kwargtrans__ ({ligand_rotatable_bonds: ligand.rotatable_bonds_count}));

web_app/src/binanajs/binana.output.pdb_file.js

@@ -2,7 +2,7 @@
 // LICENSE.md or go to https://opensource.org/licenses/Apache-2.0 for full
 // details. Copyright 2020 Jacob D. Durrant.
 
-// Transcrypt'ed from Python, 2021-11-05 16:24:09
+// Transcrypt'ed from Python, 2021-11-09 00:25:33
 var binana = {};
 import {AssertionError, AttributeError, BaseException, DeprecationWarning, Exception, IndexError, IterableError, KeyError, NotImplementedError, RuntimeWarning, StopIteration, UserWarning, ValueError, Warning, __JsIterator__, __PyIterator__, __Terminal__, __add__, __and__, __call__, __class__, __envir__, __eq__, __floordiv__, __ge__, __get__, __getcm__, __getitem__, __getslice__, __getsm__, __gt__, __i__, __iadd__, __iand__, __idiv__, __ijsmod__, __ilshift__, __imatmul__, __imod__, __imul__, __in__, __init__, __ior__, __ipow__, __irshift__, __isub__, __ixor__, __jsUsePyNext__, __jsmod__, __k__, __kwargtrans__, __le__, __lshift__, __lt__, __matmul__, __mergefields__, __mergekwargtrans__, __mod__, __mul__, __ne__, __neg__, __nest__, __or__, __pow__, __pragma__, __proxy__, __pyUseJsNext__, __rshift__, __setitem__, __setproperty__, __setslice__, __sort__, __specialattrib__, __sub__, __super__, __t__, __terminal__, __truediv__, __withblock__, __xor__, abs, all, any, assert, bool, bytearray, bytes, callable, chr, copy, deepcopy, delattr, dict, dir, divmod, enumerate, filter, float, getattr, hasattr, input, int, isinstance, issubclass, len, list, map, max, min, object, ord, pow, print, property, py_TypeError, py_iter, py_metatype, py_next, py_reversed, py_typeof, range, repr, round, set, setattr, sorted, str, sum, tuple, zip} from './org.transcrypt.__runtime__.js';
 import {OpenFile} from './binana._utils.shim.js';

web_app/src/binanajs/compile_and_copy_here.sh

 source activate Python36
 
-# Clean up old files.
-ls | grep -v "compile_and_copy_here.sh" | awk '{print "rm " $1}' | bash
-
 # Compile the python to javascript. Assumes transcrypt installed.
 cd ../../../javascript/
 ./compile.sh
 cd -
 
+# Clean up old files.
+ls | grep -v "compile_and_copy_here.sh" | awk '{print "rm " $1}' | bash
+
 # Copy over compiled files.
 cp ../../../javascript/lib/* ./

web_app/src/binanajs/math.js

-// Transcrypt'ed from Python, 2021-11-05 16:24:08
+// Transcrypt'ed from Python, 2021-11-09 00:25:32
 import {AssertionError, AttributeError, BaseException, DeprecationWarning, Exception, IndexError, IterableError, KeyError, NotImplementedError, RuntimeWarning, StopIteration, UserWarning, ValueError, Warning, __JsIterator__, __PyIterator__, __Terminal__, __add__, __and__, __call__, __class__, __envir__, __eq__, __floordiv__, __ge__, __get__, __getcm__, __getitem__, __getslice__, __getsm__, __gt__, __i__, __iadd__, __iand__, __idiv__, __ijsmod__, __ilshift__, __imatmul__, __imod__, __imul__, __in__, __init__, __ior__, __ipow__, __irshift__, __isub__, __ixor__, __jsUsePyNext__, __jsmod__, __k__, __kwargtrans__, __le__, __lshift__, __lt__, __matmul__, __mergefields__, __mergekwargtrans__, __mod__, __mul__, __ne__, __neg__, __nest__, __or__, __pow__, __pragma__, __proxy__, __pyUseJsNext__, __rshift__, __setitem__, __setproperty__, __setslice__, __sort__, __specialattrib__, __sub__, __super__, __t__, __terminal__, __truediv__, __withblock__, __xor__, abs, all, any, assert, bool, bytearray, bytes, callable, chr, copy, deepcopy, delattr, dict, dir, divmod, enumerate, filter, float, getattr, hasattr, input, int, isinstance, issubclass, len, list, map, max, min, object, ord, print, property, py_TypeError, py_iter, py_metatype, py_next, py_reversed, py_typeof, range, repr, round, set, setattr, sorted, str, sum, tuple, zip} from './org.transcrypt.__runtime__.js';
 var __name__ = 'math';
 export var pi = Math.PI;

web_app/src/binanajs/org.transcrypt.__runtime__.js

-// Transcrypt'ed from Python, 2021-11-05 16:24:08
+// Transcrypt'ed from Python, 2021-11-09 00:25:32
 var __name__ = 'org.transcrypt.__runtime__';
 export var __envir__ = {};
 __envir__.interpreter_name = 'python';